» Publications:
Papers in books and journals with peer review
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109. Machado, Daniel; Costa, Rafael S.;
Ferreira, E.C.; Rocha, Isabel; Tidor, Bruce
Exploring the
gap between dynamic and constraint-based models of metabolism.
Metabolic Engineering, (accepted), 2012. |
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108. José M. Barrigón, Ramon Ramon, Isabel Rocha, Francisco Valero,
Ferreira, E.C., José L. Montesinos
State and specific growth estimation in heterologous protein production
by Pichia pastoris.
AIChE Journal,
(accepted), 2011.
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107. Ordaz, A.; Oliveira, C.S.; Quijano, G.;
Ferreira, E.C.; Alves, M.; Thalasso, F.
Kinetic and
stoichiometric characterization of a fixed biofilm reactor by pulse
respirometry.
Journal of Biotechnology,
157(1), 173-179, 2012.
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106. Carneiro, Sónia; Lourenço, Anália;
Ferreira, E.C.; Rocha, I.
Stringent response of Escherichia coli: revisiting the bibliome
using literature mining
Microbial Informatics and
Experimentation, 1:14, 2011. |
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105. Machado, D.; Costa, R.S.; Rocha, Miguel;
Ferreira, E.C.; Tidor, B.;
Rocha, I.
Modeling formalisms in systems biology
AMB Express, 1(45), 2011. |
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104. Carreira, R., Carneiro, S., Pereira, R., Rocha, M., Rocha, I.,
Ferreira, E.C., Lourenço, A.
Semantic annotation of
biological concepts interplaying microbial cellular responses.
BMC Bioinformatics, 12(460), 2011.
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103. Mesquita, D.P., Amaral, A.L.,
Ferreira, E.C.
Identifying different types of bulking in an
activated sludge system through quantitative image analysis.
Chemosphere 85(4), 643-652, 2011.
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102. Oliveira, C.S.; Ordaz, A.;
Ferreira, E.C.; Alves, M.; Thalasso, F.
In situ pulse respirometric methods for kinetic and stoichiometric
parameters estimation in aerobic microbial communities.
Biochemical Engineering Journal
58-59, 12-19, 2011. |
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101. Santos, Sílvio B., Kropinski, A.M., Ceyssens, P.-J., Ackermann,
H.W., Villegas, A., Lavigne, R., Krylov,V.N. Carvalho, C.,
Ferreira, E.C., Azeredo, J.
Genomic and proteomic
characterization of the broad host range Salmonella phage PVP-SE1 - The
creation of a new phage genus.
Journal of Virology
85:21, 11265–11273, 2011. |
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100. Soons, Z.I.T.A.;
Ferreira, E.C.; Rocha, I.
Identification of minimal
metabolic pathway models consistent with phenotypic data.
Journal of Process Control 21(10), 1483-1492, 2011.
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99. Mesquita, D.P.; Amaral, A.L.;
Ferreira, E.C.
Characterization of activated sludge
abnormalities by image analysis and chemometric techniques.
Analytica Chimica Acta 705:1-2, 235-242, 2011. |
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98. Lourenço, A.; Carneiro, S.; Pinto, J.P., Rocha, M.;
Ferreira, E.C.; Rocha, I.
A study of the short and
long-term regulation of E. coli metabolic pathways.
Journal of Integrative Bioinformatics, 8(3), 183, 2011. |
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97. Mesquita, D.P.; Ribeiro, R.R.; Amaral, A.L.;
Ferreira, E.C.; Coelho, M.A.Z.
Image analysis application
for the study of activated sludge floc size during the treatment of
synthetic and real fishery wastewaters.
Environmental
Science and Pollution Research, 18(8), 1390-1397, 2011. |
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96. Costa, R.S, Machado, D., Rocha, I.,
Ferreira, E.C.
Critical
perspective on the consequences of the limited availability of kinetic
data in metabolic dynamic modeling.
IET Systems Biology
5(3), 157-163, 2011. |
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95. Carneiro, S.;
Ferreira, E.C.; Rocha, I.
A systematic modeling approach to
elucidate the triggering of the stringent response in recombinant E.
coli systems.
Advances in Intelligent and Soft Computing,
Vol. 93, 313-320, 2011 |
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94. Lourenço, A.; Carneiro, S.; Pinto, J.P.; Rocha, M.;
Ferreira, E.C.; Rocha, I.
Interpreting the regulatory
interplay in E. coli metabolic pathways.
Advances in
Intelligent and Soft Computing, Vol. 93, 303-312, 2011 |
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93. Carneiro, S.; Villas-Boas, S.;
Ferreira, E.C.; Rocha, I.
Metabolic footprint analysis of recombinant Escherichia coli strains
during fed-batch fermentations.
Molecular Biosystems 7(3), 899-910, 2011.
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92. Lourenço, A.; Carneiro, S.; Rocha, M.; Ferreira, E.C.; Rocha, I.
Challenges in integrating E. coli molecular biology data.
Briefings in Bioinformatics 12(2), 91-103, 2011.
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91. Santos, S.; Fernandes, E.; Carvalho, C.M.; Sillankorva, S.; Krylov,
V.N.; Pleteneva, E.A.; Shaburova, O.V.; Nicolau, A.;
Ferreira, E.C.; Azeredo, J.
Selection and characterization
of a multivalent Salmonella phage and its production in a non-pathogenic
E. coli strain.
Applied and Environmental Microbiology
76(21), 7338-7342, 2010.
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90. Mesquita, D. P., Dias, O., Elias, R.A.V., Amaral, A. L.,
Ferreira, E.C.
Dilution and magnification effects on image
analysis applications in activated sludge characterization.
Microscopy and Microanalysis 16(5), 561-568, 2010.
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89. Rocha, I., Maia, P., Evangelista, P., Vilaça, P.,
Soares, S., Pinto, J.P., Nielsen, J., Patil, K.R.,
Ferreira, E.C., Rocha, M.
OptFlux: an open-source software
platform for in silico metabolic engineering.
BMC Systems Biology 4:45, 2010. |
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88. Carneiro, S., Villas-Bôas, S.G., Rocha, I.,
Ferreira, E.C.
Applying a metabolic footprinting approach to
characterize the impact of the recombinant protein production in
Escherichia coli.
Advances in Soft Computing, Vol. 74 (Advances in
Bioinformatics), 193-200, 2010
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87. Costa, R.S., Machado, D., Rocha, I.,
Ferreira, E.C.
Hybrid
dynamic modeling of E. coli central metabolic network combining
Michaelis-Menten and approximate kinetic equations.
Biosystems 100(2), 150-157, 2010. |
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86. Domingues, L., Rocha, I., Dourado, F., Alves, M.,
Ferreira, E.C.
Virtual Laboratories in (Bio)Chemical
Engineering Education.
Education for Chemical Engineers
5(2), e22-e27, 2010. |
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85. Mesquita, D. P., Dias, O., Amaral, A. L.,
Ferreira, E.C.
A
Comparison between Bright Field and Phase Contrast Image Analysis
Techniques in Activated Sludge Morphological Characterization.
Microscopy and Microanalysis 16(2), 166-174, 2010.
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84. Costa, J.C., Alves, M.M.,
Ferreira, E.C.
A chemometric tool
to monitor high-rate anaerobic granular sludge reactors during load and
toxic disturbances.
Biochemical Engineering Journal
53(1), 38-43, 2010. |
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83. Lourenço, A., Carreira, R., Glez-Peña, D., Méndez, J.R., Carneiro,
S.A., Rocha, L.M., Díaz, F.,
Ferreira, E.C., Rocha, I., Fdez-Riverola, F., Rocha, M.
BioDR: Semantic Indexing Networks for Biomedical Document Retrieval.
Expert Systems With Applications 37(4), 3444-3453, 2010. |
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82. Sarraguça, M.C., Paulo, A., Alves, M.M., Dias, A.M.A., Lopes, J.A.,
Ferreira, E.C.
Quantitative monitoring of an activated sludge
reactor using on-line UV-visible and near infrared spectroscopy.
Analytical and Bioanalytical Chemistry 395(4), 1159-1166,
2009.
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81. Amaral, A.L., Rocha, O., Gonçalves, C., Ferreira, A.A.,
Ferreira, E.C.
Application of image analysis to the prediction of EBC barley kernel
weight distribution.
Industrial Crops and Products
30:3, 366-371, 2009. |
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80. Santos, S.R.B., Carvalho, C.A.O.C.M., Sillankorva, S., Nicolau, A., Ferreira, E.C.,
Azeredo, J.
The use of antibiotics to
improve phage detection
and enumeration by the double layer agar technique.
BMC
Microbiology 9:148, 2009.
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79. Santos, M.J., Dominguez, A., Torres, D. Rocha, O.; Peres, A.M.,
Rocha, I., Ferreira, E.C.,
Teixeira, J.A., Rodrigues, L.R.
Comparison of adsorption
equilibrium of fructose, glucose and sucrose on potassium gel-type and
macroporous sodium ion-exchange resins.
Analytica Chimica Acta 654(1), 71-76, 2009. |
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78. Evangelista, P., Rocha, I.,
Ferreira, E.C., Rocha, M.
Evolutionary Approaches for Strain
Optimization using Dynamic Models under a Metabolic Engineering
Perspective.
Lecture Notes in Computer Science
5483, 140-151, 2009. |
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77. O. Rocha, I. Rocha, C. Nobre, A. Dominguez, D. Torres, L. Rodrigues,
J.A. Teixeira, E.C. Ferreira
A dynamical model for the
fermentative production of fructooligosaccharides.
Computer Aided Chemical Engineering, vol. 27, 1827-1832, 2009. |
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76. Ana M.A. Dias,
Ferreira, E.C.
Computational Intelligence Techniques for
Supervision and Diagnostic of Biological Wastewater Treatment Systems.
in Computational Intelligent Techniques for Bioprocess
Modelling, Supervision and Control, Series: Studies in Computational
Intelligence , Vol. 218, M.C. Nicoletti and L.C. Jain (Eds.),
Springer-Verlag, Berlin, 127-162, 2009. [ISBN: 978-3-642-01887-9] |
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75. Eduardo Valente, Isabel Rocha,
Ferreira, E.C., Miguel Rocha
Modelling of Biotechnological
Processes - An approach based on Artificial Neural Networks.
in
Computational Intelligent Techniques for Bioprocess Modelling,
Supervision and Control, Series: Studies in Computational
Intelligence , Vol. 218, M.C. Nicoletti and L.C. Jain (Eds.),
Springer-Verlag, Berlin, p. 311-332, 2009. [ISBN: 978-3-642-01887-9] |
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74. Anália Lourenço; Rafael Carreira; Sónia Carneiro; Paulo Maia; Daniel Glez-Peña; Florentino Fdez-Riverola;
Ferreira, E.C., Isabel Rocha
@Note: A Workbench for
Biomedical Text Mining.
Journal of Biomedical Informatics 42(4), 710-720, 2009. |
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73. Mesquita, D.P., Dias, O., Dias, A.M.A., Amaral, A.L.,
Ferreira, E.C.
Correlation between sludge settling ability
and image analysis information using Partial Least Squares.
Analytica Chimica Acta 642(1-2), 94-101, 2009. |
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72.
Oliveira, C.S., Ordaz, A., Alba, J., Alves, M.,
Ferreira, E.C.,
Thalasso, F.
Determination of kinetic and stoichiometric
parameters of Pseudomonas putida F1 by chemostat and in situ
pulse respirometry.
Chemical Product and Process Modeling
4(2), Article 2, 2009.
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71. Costa, J.C., Moita, I.,
Ferreira, E.C., Alves, M.M.
Morphology and physiology of anaerobic granular sludge exposed to
organic solvents.
Journal of Hazardous Materials
167(1-3), 393-398, 2009. |
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70. Neri, D., Balcão, V., Costa, R., Rocha, I.,
Ferreira, E.C., Torres, D., Rodrigues, L., Carvalho Jr, L.;
Teixeira, J.A.
Galacto-oligosaccharides production during lactose
hydrolysis by free Aspergillus oryzae β-galactosidase and
immobilized on magnetic polysiloxane-polyvinyl alcohol.
Food Chemistry 115(1), 92-99, 2009. |
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69. Abreu, A.A., Danko, A.S., Costa, J.C.,
Ferreira, E.C., Alves, M.M.
Inoculum type response to
different pHs on bio-hydrogen production from L-arabinose a component of
hemicellulosic biopolymers.
International Journal of
Hydrogen Energy 34(4), 1744–1751, 2009.
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68. Carneiro, Sónia, Amaral, A.L., Veloso, A.C.A., Dias, T., Peres, A.M.,
Ferreira, E.C., Rocha, I.
Assessment of physiological conditions in E. coli fermentations by
epifluorescent microscopy and image analysis.
Biotechnology Progress 25(3), 882-891, 2009. |
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67. Pinto, José P., Dias, O., Anália Lourenço, Sónia Carneiro,
Ferreira, E.C., Isabel Rocha, Miguel Rocha.
Data integration issues in the reconstruction of the genome-scale metabolic
model of Zymomonas mobillis.
Advances in Soft Computing, Vol. 49, 92-101, 2009
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66. D.P. Mesquita, A.L. Amaral,
Ferreira, E.C., M.A.Z. Coelho
Study of saline wastewater influence on activated sludge flocs through
automated image analysis.
Journal of Chemical Technology & Biotechnology
84(4), 554-560, 2009.
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65. Costa, J.C., Alves, M.M.,
Ferreira, E.C.
Principal Component Analysis and quantitative image analysis to predict
effects of toxics in anaerobic granular sludge.
Bioresource Technology 100(3), 1180-1185, 2009. |
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64. Costa J.C., Moita I., Abreu A.A.,
Ferreira, E.C., Alves M.M.
Advanced monitoring of high rate anaerobic reactors through quantitative
image analysis of granular sludge and multivariate statistical analysis.
Biotechnology and Bioengineering 102(2), 445-456, 2009.
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63. Veloso, A.C.A., Rocha, I.,
Ferreira, E.C.
Monitoring of fed-batch E. coli fermentations with software sensors.
Bioprocess and Biosystems Engineering 32(3), 381-388, 2009. |
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62. Mesquita, D.P., Dias, O., Amaral, A.L.,
Ferreira, E.C.
Monitoring of activated sludge settling ability through image analysis:
validation on full-scale wastewater treatment plants.
Bioprocess and Biosystems Engineering 32(3), 361-367, 2009.
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61. Vaz, A.I.F., Ferreira, E.C.
Air pollution control with semi-infinite programming.
Applied Mathematical Modelling 33(4), 1957-1969, 2009.
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60. Rocha, M., Maia, P., Mendes, R., Pinto, J.P.,
Ferreira, E.C., Patil,
K., Nielsen, J., Rocha, I.
Natural computation meta-heuristics
for the in silico optimization of microbial strains.
BMC
Bioinformatics 9:499, 2008.
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59. Enrique J. Herrera-López, Bernardino Castillo-Toledo, Jesús
Ramírez-Córdova, Eugénio C. Ferreira
Takagi-Sugeno Fuzzy Controller for a Switching Bioprocess: Sector
Nonlinearity Approach.
in New Developments in Robotics, Automation and Control (A.
Lazinica, Ed.) Ch.
8, 155-180, In-Tech Education and Publishing, Vienna, 2008 (ISBN:
978-953-7619-20-6). |
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58. Mendes, R., Rocha, I., José P. Pinto,
Ferreira, E.C., Miguel Rocha
Differential evolution for the
offline and online optimization of fed-batch fermentation processes.
in Advances in Differential Evolution, Series: Studies in
Computational Intelligence , Vol. 143, p. 299-317, Chakraborty, Uday K. (Ed.)
Springer, Vienna 2008 (ISBN: 978-3-540-68827-3).
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57. Ana M. A. Dias, Isabel Moita, Ricardo Páscoa, Madalena M. Alves,
João A. Lopes,
Ferreira, E.C.
Activated sludge process monitoring through in-situ NIR spectral analysis.
Water Science and Technology 57:10, 1643-1650, 2008.
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56. Amaral, A.L., Ginoris, Y.P., Nicolau, A., Coelho, M.A.Z.,
Ferreira, E.C.
Stalked protozoa identification by image analysis and multivariable
statistical techniques.
Analytical and Bioanalytical Chemistry 391:4, 1321-1325,
2008.
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55. Ordaz, A., Oliveira, C.S., Aguilar, R., Carrión, M.,
Ferreira, E.C., Alves, M., Thalasso, F.
Kinetic and stoichiometric parameters estimation in a nitrifying bubble
column through "in-situ" pulse respirometry.
Biotechnology and Bioengineering 100:1, 94-102, 2008.
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54. Pinto, R., Amaral, A.L.,
Ferreira, E.C., Mota, M., Vilanova, M., Ruel,
K., Gama, F.M.
Quantification of the CBD-FITC conjugates surface coating on cellulose
fibres.
BMC Biotechnology 8:1, 1-7, 2008.
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53. Rocha, M., Mendes, R., Maia, P., Pinto, J.P., Rocha, I.,
Ferreira, E.C.
Evaluating simulated annealing algorithms in the
optimization of bacterial
strains.
Lecture Notes in Artificial Intelligence, 4874, 473-484, 2007.
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52. Pinto, R., Amaral, A.L., Carvalho, J.,
Ferreira, E.C., Mota, M., Gama,
F.M.
Development of
a Method Using Image Analysis for the Measurement of Cellulose-Binding
Domains Adsorbed onto Cellulose Fibers.
Biotechnology Progress 23:6, 1492-1497, 2007.
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51. Coelho, M.A.Z., Coutinho, J.A.P.,
Ferreira, E.C., Mota, M., Belo, I.
Analysis of the effects of
hyperbaric gases on S. cerevisiae cell cycle through a morphological approach.
Process Biochemistry 42:10, 1378-1383, 2007. |
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50. Costa, J.C., Abreu, A.A.,
Ferreira, E.C., Alves, M.M.
Quantitative image analysis as a diagnostic tool for monitoring structural
changes of anaerobic granular sludge during detergent shock loads.
Biotechnology and
Bioengineering 98:1, 60-68, 2007. |
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49. Ginoris Y.P., Amaral A.L., Nicolau A., Coelho M.A.Z,
Ferreira, E.C.
Raw Data Pre-Processing in the
Protozoa and Metazoa Identification by Image Analysis and Multivariate
Statistical Techniques.
Journal of Chemometrics 21:3-4, 156-164, 2007. |
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48. Ginoris Y.P., Amaral A.L., Nicolau A., Coelho M.A.Z,
Ferreira, E.C.
Development of an image analysis procedure for identifying protozoa and metazoa
typical of activated sludge system.
Water Research 42:12, 2581-2589, 2007. |
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47. Ginoris, Y.P., Amaral, A.L., Nicolau, A., Coelho,
M.A.Z.,
Ferreira, E.C.
Recognition of protozoa and metazoa using image analysis
tools, discriminant analysis, neural networks and decision trees.
Analytica
Chimica Acta 595:1-2, 160-169, 2007. |
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46. Abreu, A.A., Araya-Kroff, P., Costa, J.C.,
Ferreira, E.C., Alves, M.M.
Quantitative image analysis as a diagnostic
tool for identifying structural changes during a revival process of
anaerobic granular sludge.
Water Research 41:7, 1473-1480, 2007. |
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45. Rocha, M., Pinto, J.P., Rocha, I.,
Ferreira, E.C. Evaluating Evolutionary Algorithms and
Differential Evolution for the Online Optimization of Fermentation Processes.
Lecture Notes in Computer Science, 4447, 236-246, 2007. |
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44. Espírito-Santo¸ I.A.C.P., Fernandes, E.M.G.P., Araújo, M.M.,
Ferreira, E.C. Wasted Sludge Treatment Contributions in the WWTP
Total Cost.
WSEAS Transactions on Information Science and Applications, 4:4,
655-662, 2007. |
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43. Vaz, A.I.F.,
Ferreira, E.C., Mota, A.M.T.
Fed-batch trajectory optimal control problems with cubic splines.
WSEAS Transactions on Systems and Control, 2:1, 207-213, 2006. |
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42. Espírito-Santo¸ I.A.C.P., Fernandes, E.M.G.P., Araújo, M.M.,
Ferreira, E.C. On the secondary settler models robustness by simulation.
WSEAS Transactions on Information Science and Applications, 12:3,
2323-2330, 2006. |
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41. O.C. Pires, C. Palma, J.C. Costa, I. Moita, M.M. Alves,
Ferreira, E.C.
Knowledge-based fuzzy system for diagnosis and control of an integrated
biological wastewater treatment process.
Water Science and Technology 53:4-5, 313–320, 2006. |
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40. I.A.C.P. Espirito-Santo, E.M.G.P. Fernandes,
M.M. Araujo,
Ferreira, E.C.
How wastewater processes can be optimized using
LOQO.
Recent Advances in Optimization, series:
Lecture Notes in Economics and Mathematical Systems, Vol. 563, (Alberto Seeger,
Ed.), Springer, Berlin, 435- 455, 2006 (ISBN: 3-540-28257-2). |
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39. Amaral, A.L.
Ferreira, E.C.
Activated Sludge Monitoring of a Wastewater Treatment Plant using Image Analysis
and Partial Least Squares Regression.
Analytica Chimica Acta,
544:1-2, 246-253, 2005 |
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38. Coutinho, J.A.P., Belo
I.,
Ferreira, E.C.,
Coelho, M.A.Z.
Assessment of yeast
viability under hyperbaric conditions through a modeling approach.
Journal of Chemical Technology & Biotechnology, 80:8, 872-877, 2005. |
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37. Espírito-Santo, I.A.C.P., Fernandes, Edite M.G.P., Araújo, M.M.,
Ferreira, E.C.
NEOS Server Usage in Wastewater Treatment Cost Minimization.
Lecture Notes in Computer Science, 3483, 632-641, 2005. |
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36. Veloso, A.C.A, Rocha, I.,
Ferreira, E.C.
Identification of Yield
Coefficients in an E. coli Model - An Optimal Experimental Design Using
Genetic Algorithms.
Computer Applications in Biotechnology (Pons, M.-N., Van Impe,
J.F.M., eds.), Elsevier (ISBN: 0-08-044251-X), 43-48, 2005. |
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35. Rocha, M., Neves, J.,
Veloso, A.C.A.,
Ferreira, E.C., Rocha, I.
Evolutionary algorithms for
static and dynamic optimization of fed-batch fermentation processes.
Adaptive and Natural
Computing Algorithms, (Ribeiro, B., Albrecht, R.F., Dobnikar, A., Pearson,
D.W., Steele, N.C., eds.), Springer Verlag, Wien (ISBN: 3-211-24934-6),
288-291, 2005. |
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34. Araujo, M.A.,
Ferreira, E.C., Cunha, A.M., Mota, M.
Determination of diffusion
coefficients fo glycerol and glucose from starch based thermoplastic compounds
on simulated physiological solution.
Journal of Materials Science - Materials in Medicine 16:3, 239-246,
2005. |
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33. Coelho, M.A.Z., Belo I., Pinheiro. R.,
Amaral, A.L., Mota, M., Coutinho, J.A.P.,
Ferreira, E.C.
Effect of hyperbaric stress on yeast morphology: study by
automated image analysis.
Applied Microbiology and Biotechnology 66:3, 318-324,
2004. |
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32. Amaral, A.L., Pereira, M.A., da Motta, M., Pons M.-N.,
Mota, M.,
Ferreira, E.C., Alves, M.M.
Development of Image Analysis
Techniques as a Tool to Detect and Quantify Morphological Changes in Anaerobic
Sludge: II. Application to a Granule Deterioration Process Triggered by
Contact With Oleic Acid.
Biotechnology and
Bioengineering 87:2, 194-199, 2004. |
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31. Araya-Kroff, P., Amaral, A.L., Neves, L.,
Ferreira, E.C., Pons, M.-N., Mota, M., Alves, M.M.
Development of
Image Analysis Techniques as a Tool to Detect and Quantify Morphological
Changes in Anaerobic Sludge: I. Application to a Granulation Process.
Biotechnology and Bioengineering 87:2, 184-193, 2004. |
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30.
Ferreira, E.C., Lima, R., Salcedo, R.
Spreadsheets in Chemical Engineering Education - A Tool in Process Design
and Integration.
International Journal of Engineering Education 20:6, 928-938, 2004. |
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29. Amaral, A.L., da Motta, M., Pons, M.N., Vivier, H., Mota, M.,
Ferreira, E.C.
Survey of Protozoa and Metazoa Populations in Wastewater Treatment Plants by
Image Analysis and Discriminant Analysis.
Environmetrics 15:4, 381-390, 2004. |
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28. Rocha, M., Neves, J., Rocha, I.,
Ferreira, E.C.
Evolutionary algorithms for optimal control in fed-batch fermentation processes.
Lecture Notes in Computer Science, 3005, 84-93, 2004. |
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27. Dias, N., Amaral, A.,
Ferreira, E.C., Lima, N.
Automated image analysis to improved
bead ingestion toxicity test counts in the protozoan Tetrahymena pyriformis
Letters in Applied Microbiology
37:3, 230-233, 2003. |
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26. Lubenova, V., Rocha, I.,
Ferreira, E.C.
Estimation of Multiple Biomass
Growth Rates and Biomass Concentration in a Class of Bioprocesses
Bioprocess and Biosystems
Engineering 25:6, 395-406, 2003. |
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25. F.M. Kawasse, P.F. Amaral, M.H.M.
Rocha-Leão, M.A.Z. Coelho, A.L. Amaral,
Ferreira, E.C.
Morphological Analysis of
Yarrowia lipolytica under Stress Conditions through Image Processing
Bioprocess and Biosystems
Engineering 25:6, 371-375, 2003. |
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24. Pereira, M.A., Roest, K., Stams,
A.J.M., Akkermans, A.D.L., Amaral, A.L., Pons, M.-N.,
Ferreira, E.C., Mota, M., Alves, M.M.
Image analysis, methanogenic
activity measurements and molecular biological techniques to monitor granular
sludge from an EGSB reactor fed with oleic acid.
Water Science & Technology
47:5, 181-188, 2003. |
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23. Rocha, I., Ferreira, E.C.
On-line simultaneous monitoring of glucose and acetate with FIA during high cell
density fermentation of recombinant E. coli
Analytica Chimica Acta, 462:2, 293-304, 2002.
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22. Oliveira,
R., Ferreira, E.C., Feyo de Azevedo, S.
Stability,
dynamics of convergence, and tuning of observer-based kinetics
estimators
Journal of
Process Control, 12:2, 311-323, 2002. |
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21. I. Rocha,
E.C. Ferreira
An integrated system for advanced
monitoring and control of fed-batch fermentations of
recombinant E. coli.
Computer
Applications in Biotechnology 2001 (D. Dochain, M. Perrier, Eds.),
Pergamon Press, Oxford, 349-354, 2002. |
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20. M. da
Motta, L. Amaral, M. Casellas, M.N. Pons, C. Dagot, N. Roche,
E.C. Ferreira, H. Vivier
Characterisation of Activated Sludge By Automated Image Analysis:
Validation on Full-Scale Plants.
Computer
Applications in Biotechnology 2001 (D. Dochain, M. Perrier, Eds.),
Pergamon Press, Oxford, 427-431, 2002. |
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19. Ribeiro,
N.J., Pires, O.C., Mota, M., Ferreira, E.C.,
Alves, M.
Influence of
up-flow velocity on the performance of an anaerobic filter under oleic
acid overloads.
Biotechnology Letters, 23:22, 1833-1839, 2001. |
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18.
Ferreira, E.C., M. Mota, M.-N. Pons
Image Analysis
and Multiphase Bioreactors.
Ch. 2 in
Multiphase Bioreactor Design, J.M.S. Cabral, M. Mota, J. Tramper (Eds.),
Taylor & Francis, London, 25-52, 2001 (ISBN: 0-415-27209-2). |
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17. da Motta,
M., Pons, M.N., Vivier, H., Roche, N., Amaral, A.L.,
Ferreira, E.C., Mota, M.
Reconnaissance
Semi-Automatique de la Microfaune des Boues Activés des Stations de
Traitment d'Eaux Usées: Protorec V2.0
Récents Progrés en Génie des Procédés, 15:78 (VIM2001 - Visualisation,
Image, Modelisation, Nancy), 167-172, 2001. |
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16.
Ferreira, E.C., Salcedo, R.
A Tool to Optimize VOC Removal During Absorption and Stripping.
Chemical Engineering, 108:1, 94-98, 2001.
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15.
Ferreira, E.C., Salcedo, R.
Can Spreadsheet Solvers Solve Demanding Optimization Problems?
Computer Applications in Engineering Education, 9:1, 49-56, 2001. |
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14. da Motta,
M., Pons, M.N., Vivier, H., Amaral, A.L.,
Ferreira, E.C., Mota, M.
Study of Protozoa Population in Wastewater Treatment Plants by Image
Analysis
Brazilian Journal of Chemical Engineering, 18:1, 103-111, 2001. |
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13. Alves, M.M., Cavaleiro, A.J., Ferreira,
E.C., Amaral, A.L., Mota, M., da Motta, M., Vivier, H., Pons, M.-N.
Characterization by Image Analysis of Anaerobic Microbial Aggregates under Shock
Conditions
Water Science & Technology, 41:12, 207-214, 2000. |
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12. Baeza, J.,
Ferreira, E.C., J. Lafuente
Knowledge-based supervision and control of WWTP: A real-time
implementation.
Water Science & Technology, 41:12, 129-137, 2000. |
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11. M. Alves,
Ferreira, E.C., A.L. Amaral, A. Pereira, J.M. Novais, Mota, M.
Staged and
Non-Staged Anaerobic Filters: Performance In Relation With Physical and
Biological Characteristics of Microbial Aggregates
Journal of Chemical Technology & Biotechnology, 75:7, 601-609, 2000. |
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10. M. Perrier,
S. Feyo de Azevedo,
Ferreira, E.C., D. Dochain.
Tuning of
Observer-based Estimators: Theory and Application to the On-line
Estimation of Kinetic Parameters.
Control Engineering Practice 8:4, 377-388, 2000. |
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9. Amaral, A.L.,
Baptiste, C., Pons, M.-N., Nicolau, A., Lima, N.,
Ferreira, E.C., Mota, M., Vivier, H.
Semi-Automated
Recognition of Protozoa by Image Analysis.
Biotechnology Techniques, 13:2, 111-118, 1999. |
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8. Vicente,
A.A., Dluhý, M., Ferreira, E.C.,
Mota, M., Teixeira, J.A.
Mass Transfer
Characteristics of Glucose and Oxygen in Saccharomyces cerevisiae
Flocs.
Biochemical Engineering Journal, 2:1, 35-43, 1998. |
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7. Vicente,
A.A., Dluhý, M., Ferreira, E.C.,
Teixeira, J.A.
Modelling
Diffusion-Reaction Phenomena in Yeast Flocs of Saccharomyces
cerevisiae.
Bioprocess Engineering, 18:5, 335-342, 1998. |
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6. R.
Oliveira, Ferreira, E.C., F.
Oliveira, Feyo de Azevedo, S.
A Study on the
Convergence of Observer-Based Kinetic Estimators in Fed-Batch
Fermentations.
Journal of Process Control, 6:6, 367-371, 1996. |
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5. Feyo de
Azevedo, S., Pimenta, P., Oliveira, F.,
Ferreira, E.C.
Computer-Based
Studies on Bioprocess Engineering, II - Tools for Process Operation.
Computer and Information
Science Applications in Bioprocess Engineering (Moreira, A.R.,
Wallace, K.K., Eds.), pp. 27-49, NATO Advanced Study Institute Series,
Series E: Applied Sciences - vol. 305, Kluwer Academic Publishers,
Dordrecht, 1996. |
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4. Oliveira,
R., Ferreira, E.C., Feyo de
Azevedo, S.
Model-based
Estimation of Reaction Rates in Stirred Tank Bioreactors.
Computer
Applications in Biotechnology (Postprint Volume from the 6th
International Conference, Garmisch-Partenkirchen, Germany, 14-17 May
1995, A. Munack, K. Schügerl, Eds.), Elsevier Science Publishers,
259-263, 1996. |
| |
3. Feyo de
Azevedo, S., Pimenta, P., Oliveira, F.,
Ferreira, E.C.
Studies on
On-line State and Parameter Estimation through a Real-Time Process
Simulator.
Modeling and Control
of Biotechnical Processes 1992 (2nd IFAC Symposium) and Computer
Applications to Fermentation Technology (5th International Conference),
M. Nazmul Karim and G. Stephanopoulos (Eds.), Pergamon Press, pp.
453-458, Oxford, 1992. |
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2.
Ferreira, E.C., Duarte, J.C.
Dynamic
Modelling of Complex Enzymatic Reactions.
Scientific Computing and Automation (Europe) 1990, Series "Data
Handling in Science and Technology", Vol. 6, Cap. 18, 211-220,
E.J. Karjalainen (Ed.), Elsevier Science Publishers, Amsterdam 1990. |
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1.
Ferreira, E.C., Pereira, L.M., Feyo de Azevedo, S., Duarte, J.C.
Parameter
estimation of Kinetics and Modelling in Methanogenic Fermentation of
Methanosarcina barkeri.
Computer Applications in Fermentation Technology: Modelling and Control of
Biotechnological Processes, N.M. Fish, R.L. Fox, N.F. Thornhill (Eds.),
Elsevier Applied Science Publishers, p. 217-220, London, 1989. |
E.C. Ferreira @
Scientific Commons
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