|
135. Santos, S.R.B., Carvalho, C., Kropinski, A., Ferreira, E.C.,
Azeredo, J., Omic characterization of Salmonella and Camoylobacter
phages with high therapeutic potential. Microbiotec’11,
Braga, Portugal, 1-3 December, 2011, no. PS4:10, pp. 205. |
|
134. Mesquita, D.P., Leal, C., Oehmen, A., Amaral, A.L., Reis, M.A.M.,
Ferreira, E.C., Polyphosphates and poly-β-hydroxybutyrate granules
identification through quantitative image analysis in enhanced
biological phosphorous removal systems. Microbiotec’11,
Braga, Portugal, 1-3 December, 2011, no. PS2:53, pp. 148. |
|
133. Carneiro, S., Ferreira, E.C., Rocha, I., Metabolomics as a tool to
understand E. coli metabolic responses in recombinant processes.
Book of Abstracts of the 11th International Chemical and Biological
Engineering Conference, Lisbon, Portugal, 5-7 September 2011,
pp. 4-5. |
|
132. Mesquita, D.P., Amaral, A.L., Ferreira, E.C., Quantitative image
analysis for sludge volume index and total suspended solids prediction
in activated sludge system disturbances. Book of Abstracts of
the 11th International Chemical and Biological Engineering Conference,
Lisbon, Portugal, 5-7 September 2011, pp. 426-427. |
|
131. Portela, C., Villas-Bôas, S.G., Ferreira, E.C., Rocha, I.,
Metabolic network reconstruction of the pathogen Enterococcus faecalis.
10th Symposium on Lactic Acid Bacteria, Egmond aan Zee,
the Netherlands, August 28 to September 1, 2011. |
|
130. Dias, O., Ferreira, E.C., Rocha, I., Towards genome-wide
semi-automated transporter system annotations. 12th
International Conference on Systems Biology – ICSB 2011,
Heidelberg, Germany, August 28 - September 1, 2011. |
|
129. Costa, R.S., Machado, D., Rocha, I., Ferreira, E.C., An approach
towards genome-scale kinetic modelling: application to the Escherichia
coli metabolism. 12th International Conference on Systems
Biology – ICSB 2011, Heidelberg, Germany, August 28 - September
1, 2011. |
|
128. Machado, D., Costa, R.S., Ferreira, E.C., Rocha, I., Tidor, B.
Exploring the gap between dynamic and constraint-based models of
metabolism. 5th Annual Workshop on the Business-Government
Interface: Systems and Synthetic Biology, Universidade do
Minho, Braga, 6 de junho de 2011. [Prémio Melhor Poster] |
|
127. Portela, C., Villas-Bôas, S.G., Ferreira, E.C., Rocha, I. Genome
scale network reconstruction of the pathogen Enterococcus faecalis.
5th Annual Workshop on the Business-Government Interface:
Systems and Synthetic Biology, Universidade do Minho, Braga, 6
de junho de 2011. |
|
126. Costa, R.S., Machado, D., Rocha, I., Ferreira, E.C., Genome-scale
kinetic modeling of E. coli metabolism. 5th Annual Workshop on
the Business-Government Interface: Systems and Synthetic Biology,
Universidade do Minho, Braga, 6 de junho de 2011. |
|
125. Barrigón, J.M., Rocha, I., Valero, F., Ferreira, E.C., Montesinos,
J.L. Observer based estimation in heterologous protein production by
Pichia pastoris. BioSpain 2010 – 5th International Meeting
on Biotechnology and BIOTEC 2010 Scientific Congress on Biotechnology,
Pamplona, Espanha, Sept 29th – Oct 1st, 2010, p. 267. |
|
124. Amaral, A.L.; Mesquita, D.P.; Ferreira, E.C. Characterisation of
activated sludge abnormalities by image analysis and multivariate
statistics. 12th International Conference on Chemometrics in
Analytical Chemistry - CAC 2010, Antwerp, Belgium, 18-21
October 2010, 251, 2010. |
|
123. Machado, Daniel; Costa, Rafael S.; Rocha, Isabel; Tidor, Bruce;
Ferreira, E.C. Exploring the gap between dynamic and constraint-based
models of metabolism. Gothenburg Life Science Conference XI
Industrial Systems Biology - Sustainable production of fuels and
chemicals – Program and Abstract Book. August 18-20, 2010,
Chalmers, Sweden, P11, pp. 44. |
|
122. Santos, S., Villegas, A., Kropinski, A., Krylov, V., Carvalho, C.,
Ferreira, E.C., Azeredo, J. Genome sequence of the broad host range
Salmonella bacteriophage phi PVP-SE1. Viruses of Microbes,
Paris, France, June 21-25, 2010. |
|
121. Mesquita, D.P., Amaral, A.L., Ferreira, E.C. Monitoring
filamentous bulking and pin-point flocs in a lab-scale activated sludge
system using image analysis. Water Research Conference,
Lisbon, Portugal, 11-14 April 2010, 2010 p. P063. |
|
120. Santos, S., Azeredo, J., Ferreira, E.C. Modelling Salmonella
phage production in a bioreactor. Phages in Interaction III
(PhageBiotics), Leuven, Bélgica, 18 de Dezembro de 2009. |
|
119. Nobre, C., Dominguez, A., Torres, D., Rocha, O., Rocha, I.,
Ferreira, E.C., Teixeira, J.A., Rodrigues, L.R.
Optimization of a
fructooligosaccharides purification method using activated charcoal.
Book of Abstracts of MicroBiotec09 (edited by the
Organizing Committee, Universidade do Minho), Vilamoura, Nov. 28-30,
2009, p. 242. |
|
118. Azeredo, J., Ferreira, E.C., Gannon, B., Carvalho, C., Santos, S.,
Krylov, V., Safety issues concerning phage therapy for veterinary
applications. Book of Abstracts of MicroBiotec09
(edited by the Organizing Committee, Universidade do Minho), Vilamoura,
Nov. 28-30, 2009, p. 266. |
|
117. Carneiro, S., Lourenço, A., Carreira, R., Rocha, M., Ferreira,
E.C., Rocha, I.,
Digging out evidences on
Escherichia coli stringent
response from scientific literature. Book of Abstracts of
MicroBiotec09 (edited by the Organizing Committee, Universidade
do Minho), Vilamoura, Nov. 28-30, 2009, p. 30.
|
|
116. Costa, R.S., Machado, D., Rocha, I., Ferreira, E.C.,
Integration of
proteomic data for predicting dynamic behaviour in an E. coli central
carbon network after genetic perturbations. Book of Abstracts of
MicroBiotec09 (edited by the Organizing Committee, Universidade
do Minho), Vilamoura, Nov. 28-30, 2009, p. 308. |
|
115. Rocha, I., Lourenço, A., Rocha, M., Ferreira, E.C.
Systems Biology
for the development of microbial cell factories. Book of
Abstracts of MicroBiotec09 (edited by the Organizing Committee,
Universidade do Minho), Vilamoura, Nov. 28-30, 2009, p. 292. |
|
114. Soons, Z.I.T.A., Rocha, I., Ferreira, E.C.,
Towards bioprocess
control based on a reduced metabolic model of Escherichia coli.
Book of Abstracts of MicroBiotec09 (edited by the Organizing
Committee, Universidade do Minho), Vilamoura, Nov. 28-30, 2009, p. 311.
|
|
113. Dias, O., Rocha, M., Rocha, I., Ferreira, E.C.
Metabolic
reconstruction of less characterized microorganisms: a new methodology
for reaction identification from genome sequencing data.
Jornadas de Bioinformática 2009, Lisboa 3-6 de Novembro de
2009, pp. 57.
|
|
112. Vilaça, P., Maia, P., Evangelista, P., Ferreira, E.C., Rocha, M.,
Rocha, I. A study on the effects of using gene-reaction rules on in
silico strain optimization. Jornadas de Bioinformática 2009,
Lisboa 3-6 de Novembro de 2009, pp. 175.
|
|
111. Portela, C., Carneiro, S., Villas-Bôas, S.G., Lourenço, A., Rocha,
I., Ferreira, E.C.
Metabolic network reconstruction of the pathogen
Enterococcus faecalis. Jornadas de Bioinformática 2009,
Lisboa 3-6 de Novembro de 2009, pp. 151. |
|
110. Mesquita, D.P., Louvet, J.N., Potier, O., Amaral, A.L., Pons, M.N.,
Ferreira, E.C. Inconvéniants de l’usage d’eau usée synthétique.
8ème Congrès International Ressources en eau - Quels outils
scientifiques pour une gestion durable de leur qualité? 26-28
Oct 2009 Nancy, France.
|
|
109. Nobre, C., Dominguez, A., Torres, D., Rocha, O.; Rocha, I.,
Teixeira, J.A., Ferreira, E.C., Rodrigues, L. Determination of
frutooligosaccharides adsorption parameters using ion-exchange resins.
21st International Ion Chromatography Symposium – IICS2009,
21 - 24 September 2009, Dublin, Ireland.
|
|
108. Mesquita, D.P., Amaral, A.L., Ferreira, E.C.
Surveying a Wastewater
Treatment Process through Image Analysis and Partial Least Squares.
Abstracts of EuroAnalysis 2009, Innsbruck, Austria September 6-10,
2009, p. PO88-A2.
|
|
107. Carneiro, S., Villas-Bôas, S., Rocha, I., Ferreira, E.C.
Metabolic
footprinting of Escherichia coli grown in . fed-batch fermentation
during recombinant protein production. 14th European Congress on
Biotechnology, Barcelona 13-16 September, 2009, Abstract 4.2.14,
New Biotechnology, Vol. 25S, p. S342.
|
|
106. Santos, S.B., Azeredo, J., Ferreira, E.C.
Modelling Production of a
Salmonella phage. 18th Evergreen International Phage Biology Meeting,
Olympia, WA, Aug 9-14, 2009, p. 30.
|
|
105. Ferreira, E.C., Rocha, I., Rodrigues, L., Kluskens, L., Rocha,
M., Lourenço, A., Mota, M., Mergulhão, F., Oliveira, R.
Bridging
Systems and Synthetic Biology for the development of improved
microbial cell factories. Proceedings of the 1st MIT-Portugal
Annual Conference – Engineering for Better Jobs (A.M. Cunha,
O.S. Carneiro, Eds.), Centro Cultural de Belém, Lisboa, 7 de Julho de
2009, p. 23-24.
|
|
104. Rocha, I., Maia, P., Pinto, J.P., Evangelista, P., Nielsen, J.,
Patil, K.R., Ferreira, E.C., Rocha, M.
OptFlux: a software for metabolic
engineering. 17th Annual International Conference on Intelligent
Systems for Molecular Biology (ISMB) & 8th European Conference on
Computational Biology (ECCB). June 27 – July 2, 2009, Stockholm,
Sweden.
|
|
103. Maia, P., Ferreira, E.C., Rocha, M., Rocha, I.
Multi-criterion
approaches for the in silico optimization of mutant microorganisms.
17th Annual International Conference on Intelligent Systems for
Molecular Biology (ISMB) & 8th European Conference on Computational
Biology (ECCB). June 27 – July 2, 2009, Stockholm, Sweden.
|
|
102. Costa, R., Rocha, I., Ferreira, E.C.,
Dynamic modeling of E. coli
central carbon metabolism combining different kinetic rate laws. 17th
Annual International Conference on Intelligent Systems for Molecular
Biology (ISMB) & 8th European Conference on Computational Biology (ECCB).
June 27 – July 2, 2009, Stockholm, Sweden.
|
|
94.
Carneiro, S., Lourenço, A., Carreira, R., Rocha, M., Ferreira, E.C.,
Rocha, I., Uncovering mechanisms underlying the
Escherichia coli
stringent response: application of text mining approaches to identify
meaningful relations in text documents. Book of Abstracts of the 1st
Int. Conf. on Microbial Stress: From Molecules to Systems. May 7th -
10th 2009, Semmering, Austria, 127-128.
|
|
93. Lourenço, A., Carneiro, S., Carreira, R., Rocha, M., Rocha, I.,
Ferreira, E.C. Bringing Text Miners and Biologists Closer Together.
3rd International Biocuration Conference, Berlin, 16-19 Abr 2009, 1
pp. Nature Proceedings -
http://dx.doi.org/10.1038/npre.2009.3188.1 |
|
92. Nobre, c., Santos, M.J., Dominguez, A., Torres, D., Peres, A.M., Rocha,
I., Ferreira, E.C., Rodrigues, L.R., Teixeira, J.A.
Adsorption equilibrium of
fructose, glucose and sucrose for cationic resins in the sodium and potassium
form. SCM-4 - Fourth International Symposium on Separation and Characterization
of Natural and Synthetic Macromolecules, 28-30 January 2009, Amsterdam, The
Netherlands, pO06.
|
|
91. Costa, R.S., Rocha, I., Ferreira, E.C.
Model Reduction
based on dynamic sensitivity analysis: A systems biology case of study.
Workshop Model Reduction for industrial control optimization applications,
Frankfurt, 4-5 Sept 2008, 2 pp.
|
|
90. Xavier, A.M.R.B., Correia, M., Amaral, A.L., Ferreira,
E.C. Effect of different cultivation conditions on Trametes versicolor:
morphological image analysis and metabolic production. Book of Abstracts
of the 7th European Symposium on Biochemical Engineering Science - ESBES 7,
Faro, Portugal, September 7-9, 2008, pp. 157.
| |
89. Rocha, I., Maia, P., Rocha,
M., Ferreira, E.C.
OptGene – a framework for
in silico metabolic engineering. Book
of Abstracts of the 10th International Chemical and Biological
Engineering Conference - CHEMPOR 2008, E.C. Ferreira and M.
Mota (Eds.), Braga, Portugal, September 4-6, 2008, pp. 218-219 (ISBN:
978-972-97810-4-9).
| |
88. Dias,
A.M.A., Paulo, A., Mesquita, D.P., Alves, M.M., Ferreira, E.C.
Multivariate monitoring of an activated sludge process for
biological treatment of a synthetic wastewater effluent.
Book of Abstracts of the 10th International Chemical and Biological
Engineering Conference - CHEMPOR 2008, E.C. Ferreira and M. Mota
(Eds.), Braga, Portugal, September 4-6, 2008, pp. 735-736 (ISBN:
978-972-97810-4-9).
| |
87. Nobre, C., Santos, M.J., Dominguez, A., Torres, D.,
Rodrigues, L., Rocha, I., Teixeira, J.A., Ferreira, E.C.
Fractionation of
fructo-oligosaccharides by gel filtration. Book of
Abstracts of the 10th International Chemical and Biological Engineering
Conference - CHEMPOR 2008, E.C. Ferreira and M. Mota (Eds.), Braga,
Portugal, September 4-6, 2008, pp. 882 (ISBN: 978-972-97810-4-9).
| |
86. Domingues,
L., Rocha, I., Dourado, F., Alves, M.M., Ferreira, E.C.
Virtual laboratories in (bio)chemical engineering education.
Book of Abstracts of the 10th International Chemical and Biological
Engineering Conference - CHEMPOR 2008, E.C. Ferreira and M. Mota
(Eds.), Braga, Portugal, September 4-6, 2008, pp. 234-235 (ISBN:
978-972-97810-4-9).
| |
85. Carneiro,
S., Lourenço, A.G., Mendes, R., Rocha, M., Ferreira, E.C., Rocha, I.
An
Integrated Analysis of the Metabolic and Regulatory Networks of Escherichia coli
K12. Abstract Book of the 9th International Conference on Systems
Biology – ICSB 2008, Göteborg August 23-27, 2008, DS2-94, p.146.
| |
84. Sílvio
R.B. Santos, E. Fernandes, V.N. Krylov, E.A. Pleteneva, O.V. Shaburova, A.
Nicolau, E.C. Ferreira, J. Azeredo,
Production of a Salmonella bacteriophage in
a non-pathogenic E. coli strain. Abstract Book of the Edinburgh Phage
Conference 2008, July 26th-29th, 2008 Edinburgh, UK, p. 74.
| |
83. Sílvio
R.B. Santos, J. Azeredo, A. Nicolau, E.C. Ferreira,
The use of antibiotics to
improve phage detection and enumeration by the double-layer agar technique.
Abstract Book of the Edinburgh Phage Conference 2008, July
26th-29th, 2008 Edinburgh, UK, p. 61.
| |
82. Dias,
A.M.A., Paulo, A., Mesquita, D., Alves, M.M., Lopes, J.A., Ferreira, E.C.
Monitoring an activated sludge reactor using IR spectroscopy.
Proceedings of the 11th International Conference on Chemometrics in Analytical
Chemistry - CAC2008, Montpellier, France, 30 June - 4 July, 2008, Vol.
2, p. 73.
| |
81. Lourenço, A., Carreira, R., Carneiro, S., Maia, P.,
Ferreira, E.C., Rocha, M., Rocha, I.
The @Note Biomedical Text Mining Workbench.
Workshop Systems Biology in Medicine,
Barcelona, European Science Foundation, May 8-10, 2008.
|
|
80. Carneiro, S., Lourenço, A.G., Mendes, R., Rocha, M.,
Ferreira, E.C., Rocha, I.
Network analysis of an integrated metabolic/regulatory
model of Escherichia coli. Workshop Systems Biology in Medicine,
Barcelona, European Science Foundation, May 8-10, 2008. |
|
79. Carneiro, S., Maia, P. Rocha, M., Ferreira, E.C., Rocha, I.
Constraint-based approach for in silico
Escherichia coli combined
regulatory/metabolic modelling. Livro de Actas do Congresso Micro
'07 - Biotec '07 - XXIII JPG, Lisboa 30.11 - 2.12 2007, p. 176.
|
|
78. Costa, J.C., Moita, I., Abreu, A.A., Ferreira, E.C., Alves, M.A.
Use of
morphological and physiological information to identify changes in anaerobic
granular sludge during organic overloads. Livro de Actas do
Congresso Micro '07 - Biotec '07 - XXIII JPG, Lisboa 30.11 - 2.12
2007, p. 151.
|
|
77. Costa, R.S., Carneiro, S.M., Rocha, I., Ferreira, E.C.
Effect of pH
variation on the acetate “switch” and biomass growth in an Escherichia coli
aerobic fermentation: global gene expression profiles analysis.
Livro de Actas do Congresso Micro '07 - Biotec '07 - XXIII JPG,
Lisboa 30.11 - 2.12 2007, p. 176.
|
|
76. Lourenço, A.M.G., Simões, A.M.B., Almeida, J.J.D., Rocha, M.F.P., Rocha,
I.C.P., Ferreira, E.C. Literature mining applied to systems biology
information retrieval. Livro de Actas do Congresso Micro '07 -
Biotec '07 - XXIII JPG, Lisboa 30.11 - 2.12 2007, p. 171.
|
|
75. Mesquita, D.P., Dias, O., Amaral, A.L., Ferreira, E.C.
Monitoring
activated sludge systems from wastewater treatment plants: automated image
analysis procedures and their relation with operating parameters.
Livro de Actas do Congresso Micro '07 - Biotec '07 - XXIII JPG,
Lisboa 30.11 - 2.12 2007, p. 146.
|
|
74. Nicolau, A., Santos, S., Carvalho, C., Ferreira, E.C., Azeredo, J.
Pitfalls and successes in phage therapy: the involvement of the UMinho
team
in the European project Phagevet-P. Livro de Actas do Congresso
Micro '07 - Biotec '07 - XXIII JPG, Lisboa 30.11 - 2.12 2007, p.
61.
|
|
73. Coelho, M.A.Z., Coutinho, J.A.P., Mota, M., Ferreira, E.C., Belo,
I. Saccharomyces cerevisiae morphology under hyperbaric gases.
Book of Abstracts, European Congress of Chemical Engineering (ECCE-6),
Copenhagen, Denmark, p. 823, 2007.
|
|
72. Amaral, A.L.P., Ginoriz, Y.P., Nicolau, A., Coelho, M.A.Z., Ferreira,
E.C. Stalked protozoa identification by
image analysis and multivariable statistical techniques. EUROanalysis XIV, Antwerp, Belgium, p. 140, 9-14
de Setembro de 2007.
|
|
71. Nobre, C., Dominguez, A., Torres, D., Rocha, O., Rodrigues, L., Rocha, I.,
Teixeira, J.A., Ferreira, E.C. Purification of fructo-oligosaccharides by
adsorption onto charcoal filtres. 4th Probiotics, Prebiotics and New Foods
jointly with XXX International Congress on Microbial Ecology And Disease
(Rome, Italy, September 16-18, 2007), abstract in Cibus - Giornale
dell’alimentazione e patologie correlate, vol. 3, nº 2, p. 75, Agosto 2007
(ISSN 1126-6929).
|
|
70. Dominguez, A., Nobre, C., Torres, D., Rocha, O., Rodrigues, L.R., Rocha,
I., Teixeira, J.A., Lima, N., Ferreira, E.C.
Production of Fructooligosaccharides by Aureobasidium sp. and Aspergillus sp.
IFT Annual Meeting – Food Smarts, Chicago, US, 28 Jul -1 Aug 2007.
|
|
69.
Carneiro, S.,
Ferreira, E.C., Rocha, I.
Metabolic modelling of stringent response in recombinant
Escherichia coli. 2nd
Conference Foundations of Systems Biology in Engineering – FOSBE 2007,
Stuttgart, Germany, p. B-30, 9-12 de Setembro de 2007.
|
|
68. Santos, S.R.B., Azeredo, J., Nicolau, A., Ferreira, E.C.
A mathematical
model for a Salmonella bacteriophage. 17th Evergreen International Phage Biology
Meeting, Olympia, Washington, EUA, p. E-17, 12-17 de Agosto de 2007. |
|
67. Vaz, A.I.F., Ferreira, E.C. An application of semi-infinite programming to
air pollution control. Book of Abstracts of the 22nd European Conference on
Operational Research EURO XXII, Praga, República Checa, p. 85, 8-11 de Julho
de 2007. |
|
66. Herrera, E., Castillo, B., Ramírez, J., Ferreira, E.C.
Modelo Exacto difuso
de un cultivo por lote alimentado. XII Congreso Nacional de Biotecnología y
Bioingeniería, Morelia, Michoacan, México, 1 pp, 25-29 de Junho de 2007. |
|
65. Torres, D., Dominguez, A., Rodrigues, L., Rocha, I.,
Cardoso, S.M., Silva, A.M.S., Domingues, M.R.M., Rocha, O., Nobre, C.,
Ferreira, E.C., Teixeira, J.A. Experimental approach for prebiotic
oligosaccharides fractionation and chemical characterization. International
Symposium on “Functional Foods in Europe – International Developments in
Science and Health Claims”, 9-11 May 2007, Malta. |
|
64. Rocha, O., Dominguez, A., Nobre, C., Torres, D., Rodrigues, L., Teixeira,
J.A., Rocha, I. Ferreira, E.C. Modeling and simulation of Fructo-oligosaccharides
production. 2nd FEBS Advanced Lecture Course on Systems Biology: From Molecules
to Life, 10-16 March 2007, Gosau, Austria, T-P22, p. 183, 2007. |
|
63. Rocha, I., Ferreira, E.C. Application of genome-scale models
to the optimization of recombinant protein production in E. coli. IECA2006 - 3rd
International E. coli Alliance Conference on Systems Biology 2006. 30
October - 3 November 2006, Jeju Island, Republic of Korea, p. 104, 2006. |
|
62. Santos, S.R.B., Azeredo, J., Nicolau, A., Ferreira, E.C.
Modelling bacteria
and bacteriophage population dynamics. Phage Technologies Workshop. 1
pp., Nottingham, 25 October 2006. |
|
61. Mesquita, D.P., Amaral, A.L., Ferreira, E.C.
Monitorização de lamas activadas por
análise de imagem. Resumos do 12º Encontro Nacional de Saneamento Básico -
Planeamento Estratégico em Águas e Resíduos, Vieira, J.M.P., Matos, J.S. (eds.),
Cascais, 24-27 Out., 107-108, 2006 (ISBN:978-972-95302-8-9). |
|
60. Mota, A., Vaz, A.I.F., Ferreira, E.C.
Determinação de trajectória óptima em
processos de fermentação semi-contínua. IO 2006 - 12º Congresso da APDIO.
SC1, p. 25, 8-11 de Outubro de 2006. Lisboa. |
|
59. Rocha, I., Rocha, M., Ferreira, E.C., Patil, K.R., Nielsen, J.
An improved
evolutionary algorithms-based framework for identifying in silico metabolic
engineering targets. Metabolic Engineering VI: From recDNA towards
Engineering Biological Systems. 1-5 October, Noordwijkerhout, The
Netherlands, P. 185, 2006.
|
|
58. Carneiro, S., Rocha, I., Ferreira, E.C.
Application of a genome-scale
metabolic model to the inference of nutritional requirements and metabolic
bottlenecks during recombinant protein production in Escherichia coli.
4th Recombinant Protein Production Meeting – RPP2006 – A Comparative View on
Host Physiology. Barcelona, September 21-23, p. 135-137, 2006. Also
published in
Microbial Cell Factories 2006, 5(Suppl):P52. |
|
57. Nobre, C., Dominguez, A., Torres, D., Rocha, O., Rodrigues, L., Rocha, I.,
Teixeira, J.A., Ferreira, E.C. Purification of fructo-oligosaccharides by
nanofiltration. IUFoST XIIIth World Congress of Food Science and Technology "Food
is Life", IUFOST2006/1242, p. 591, Nantes, France, 17-21 Sept. 2006. |
|
56. Ginoris, Y.P., Amaral, A.L., Nicolau, A., Ferreira, E.C., Coelho, M.A.Z.
Recognition of protozoa and metazoa using image analysis tools, discriminant
analysis and neural network. 10th International Conference on Chemometrics in
Analytical Chemistry – CAC2006, P003, Águas de Lindóia, Brasil, 10-15 Set.
2006. |
|
55. Costa, J.C., Abreu, A.A., Ferreira, E.C., Alves, M.M.
Effects of detergent shock loads on
anaerobic granular sludge morphology and methanogenic activity.
International Symposium on Environmental Biotechnology 2006 – Book of Abstracts,
Leipzig, Germany, p. 288, 2006. |
|
54. Dominguez, A., Nobre, C., Torres, D., Rodrigues, L., Rocha, I., Teixeira,
J.A., Lima, N., Ferreira, E.C. Optimization of fermentation conditions for
fructooligosaccharides productivity by Aureobasidium. World Congress on
Industrial Biotechnology and Bioprocessing, Toronto, Canada July 11 - 14,
2006. |
|
53. Vaz, A.I.F., Ferreira, E.C. Optimização e controlo da poluição atmosférica
com programação semi-infinita. Encontro Nacional da Sociedade Portuguesa de
Matemática, 20-23 Junho 2006, Lisboa, IX-2-2. p. 45, 2006. |
|
52. Amaral, A.L., Alves, M.M., Mota, M., Ferreira, E.C.
Application of image
analysis techniques in dispersed and aggregated bacteria determination in
wastewater treatment processes. Proceedings of the 1st Image Analysis for
Microscopy Conference, Liverpool, p. 34-35, 2006. |
|
51. Torres, D., Dominguez, A., Rodrigues, L.R., Rocha, I., Teixeira, J.A., Lima,
N., Ferreira, E.C. Prebiotics – from concept to product: the BIOLIFE project.
Livro de Actas do Congresso MICRO'05-BIOTEC'05, Póvoa de Varzim, 30 de
Novembro a 3 de Dezembro, P138, p. 210, 2005. |
|
50. Veloso, A.C.A., Rocha, I., Carvalho, S., Carneiro, S., Dias, T., Peres,
A.M., Ferreira, E.C. Escherichia coli expressing in a fluorescence protein as a
model system for the optimization of environmental and processing conditions.
Livro de Actas do Congresso MICRO'05-BIOTEC'05, Póvoa de Varzim, 30 de
Novembro a 3 de Dezembro, P349, p. 423, 2005.
|
|
49. Rocha, I., Carneiro, S., Veloso, A.C.A., Ferreira, E.C.
Application of
genome-scale metabolic models to the optimization of recombinant protein production in
Escherichia coli. Livro de Actas do Congresso MICRO'05-BIOTEC'05, Póvoa
de Varzim, 30 de Novembro a 3 de Dezembro, P326, p. 400, 2005 |
|
48. Rocha, M., Rocha, I., Ferreira, E.C., Veloso, A.C.A.
Evolutionary algorithms
for offline and online optimization of fed-bacth fermentation processes.
Livro de Actas do Congresso MICRO'05-BIOTEC'05, Póvoa de Varzim, 30 de
Novembro a 3 de Dezembro, P327, p. 401, 2005. |
|
47. Abreu A.A., Costa J.C., Araya-Kroff P., Ferreira E.C., Alves M.M.
Recovery
of acetoclastic activity in anaerobic granular sludge, monitored by methanogenic
activity measurements and image analysis. Livro de Actas do Congresso
MICRO'05-BIOTEC'05, Póvoa de Varzim, 30 de Novembro a 3 de Dezembro, P198,
p. 272, 2005.
|
|
46. Ferreira, E.C. Engenharia Química sem Fronteiras - Novas Tendências no
Ensino da Engenharia Química. Colóquio Anual de Engenharia Química,
COPPE, Universidade Federal do Rio de Janeiro, 25 de Novembro de 2005. |
|
45.Perez, Y., Amaral. A.L., Nicolau, A., Ferreira, E.C., Coelho, M.A.
Semi-automatic recognition of protozoa and metazoa by image analysis, neural
networks and decision trees. 10th Mediterranean Congress of Chemical
Engineering, Barcelona, November 15-18, 2005. |
|
44. Rocha, I., Ferreira, E.C.
A systems biology approach for the optimization of
recombinant protein production in E. coli. First FEBS Advanced lecture Course on Systems Biology, 12-18 de Março
de 2005, Gosau, Austria, U-P20, p. 153, 2005. |
|
43. Amaral, A.L.,
Ferreira, E.C. Activated sludge monitoring of a
wastewater treatment plant using image analysis and partial least squares. 9th International Conference Chemometrics in Analytical Chemistry,
Lisbon, Portugal, Abstract 127, p. 111, 20-23 September 2004. |
|
42. Rocha, I.,
Ferreira, E.C. On-line calculation of CTR and OTR during high-cell density recombinant E. coli
fed-batch fermentation: MS calibration, on-line data acquisition, analysis and
integration. 9th International Conference Chemometrics in Analytical Chemistry,
Lisbon, Portugal, Abstract 20, p. 218, 20-23 September 2004. |
|
41. Espírito Santo, I., Fernandes, E., Araújo, M.,
Ferreira, E.C.
How wastewater processes
can be optimized using LOQO. 12th French-German-Spanish Conference on Optimization, Avignon,
September 20-24, 2004. |
|
40. Araújo, M.A.,
Ferreira, E.C., Cunha, A.M.,
Mota, M.
Determination of diffusion coefficients of
glycerol and glucose from starch based thermoplastic compounds on simulated physiological
solution. Bioévora2004 - 2º Congresso Ibérico de Biomateriais, P37, 9 a 11 de
Setembro de 2004, Évora. |
|
39. Vaz, I.,
Ferreira, E.C.
Semi-infinite
air pollution control problems. Optimization 2004, MB2.2, p. 47, 25-28 July 2004, Lisbon. |
|
38. Rocha, I.,
Ferreira, E.C.
Application of genetic algorithms to
model parameter identification of a recombinant E. coli high-cell density fed-batch
fermentation. Abstracts of 11th European
Congress on Biotechnology, 24-29 August 2003, Basel, Switzerland, P570.
|
|
37. Belo, I., Ferreira, E.C., Pinheiro,
R., Coutinho, J.A.P., Coelho, M.A.Z., Mota, M.
Comparison of yeast response to increased pressure at aerobic and anaerobic
conditions. Abstracts of 11th European Congress on Biotechnology, 24-29 August 2003,
Basel, Switzerland, P284. |
|
36. Gabriela Ribeiro, Ferreira, E.C.,
Cristina Amorim, Raquel Pereira.
Levantamento da situação de descarga de águas residuais industriais das empresas
sediadas nos Parques Industriais de Adaúfe e Celeirós. 10º ENaSB - Encontro Nacional de Saneamento Básico, SILUBESA - Simpósio
Luso-Brasileiro de Engenharia Sanitária e Ambiental - Uso Sustentável da Água,
Braga, 16-19 Setembro 2002. [Comunicação oral;
versão de texto final com 18
páginas em CD-ROM] |
|
35. Sofia
Rodrigues, A. Luís Amaral, Cristina Amorim, Raquel Pereira,
Ferreira, E.C. "Bulking"
filamentoso na ETAR de Braga - Análise, diagnóstico e soluções. 10º
ENaSB - Encontro Nacional de Saneamento Básico, SILUBESA - Simpósio
Luso-Brasileiro de Engenharia Sanitária e Ambiental - Uso Sustentável da
Água, Braga, 16-19 Setembro 2002. |
|
34. Rui
Faria, Cláudio Costa, Ferreira, E.C.
Controlo do
bulking filamentoso – Acompanhamento de um processo de tratamento de
efluentes do SIDVA. 10º
ENaSB - Encontro Nacional de Saneamento Básico, SILUBESA - Simpósio
Luso-Brasileiro de Engenharia Sanitária e Ambiental - Uso Sustentável da
Água,, Braga, 16-19 Setembro 2002. |
|
33. Kawasse,
F.M., P.F. Amaral, M.H.M. Rocha-Leão, M.A.Z. Coelho, A.L. Amaral,
Ferreira, E.C. Morphological
analysis of Yarrowia lipolytica under stress conditions through image
processing. European
Symposium on Biochemical Engineering Science (ESBES-4), P97, Delt,
The Netherlands, 29-31 August 2002. |
|
32. Coelho,
M.A.Z., A.L. Amaral, I. Belo, M. Mota, J.A.P. Coutinho,
Ferreira, E.C. Classification
of Saccharomyces cerevisiae morphology employing image analysis.
European
Symposium on Biochemical Engineering Science (ESBES-4),, P98, Delt,
The Netherlands, 29-31 August 2002. |
|
31.
Ferreira, E.C., Teixeira, J.A.
O Ensino de
Engenharia Biológica na Universidade do Minho.
XIV Congresso da Ordem dos Engenheiros – Ensino da Engenharia,
Coimbra, 27 - 29 de Junho de 2002, resumo editado em CD-ROM (poster). |
|
30. Feyo de
Azevedo, S., Ferreira, E.C.
O Portal da
Rede Portuguesa sobre Educação em Engenharia Química.
XIV Congresso da Ordem dos Engenheiros – Ensino da Engenharia,
Coimbra, 27 - 29 de Junho de 2002, resumo editado em CD-ROM (poster). |
|
29. da
Motta, M., L. Amaral, D. Ho, M.N. Pons, H. Vivier, N. Roche,
Ferreira, E.C. Sludge
Characterization by Image Analysis. Workshop
Nancy-Karlsruhe-Ensheden (NKE), La Petite Pierre (Alsace) 2001. |
|
28. Rocha, I.,
Ferreira, E.C. Measurement of
acetate during the production of recombinant proteins with E. coli.
International Conference Recombinant Protein Production with prokaryotic
and eukaryotic host cells, Semmering, Austria, 5 a 8 de Outubro de
2000 (poster). |
|
27. Rocha, I.,
Ferreira, E.C. On-line
monitoring of glucose and acetate during high-cell density fermentations
of Escherichia coli with a flow injection analysis system.
International Conference on Measurement, Analysis & Control in
Bioprocess Technologies – Current Status and Future Prospects,
Cambridge, 24 a 26 de Setembro de 2000. |
|
26. Freitas,
C., Amaral, A.L., Fialova, M.,
Ferreira, E.C., Zahradnik, J., Teixeira, J.A.
Characterization of Bubbles in a Bubble Column by Image Analysis.
CHISA
2000: 14th International Congress of Chemical and Process Engineering,
Praga, 27-31 de Agosto 2000. |
|
25. Costa,
A.M., Vicente, A.A., Amaral, A.L.,
Ferreira, E.C., Teixeira, J.A., Machado Cruz, J.M.
Aplicação de
um Sistema de Análise de Imagem à Monitorização da Fermentação. XXVII
Encontro de Técnicos Cervejeiros, Vialonga, 18-19 de Maio de 2000.
Publicado na revista Cerveja - Revista da APTCM - Associação
Portuguesa dos Técnicos de Cerveja e Malte, nº 18, p. 27, 2001. |
|
24. Vicente,
A.A., Dluhý, M., Ferreira, E.C.,
Mota, M., Teixeira, J.A. Determination
of the Diffusion Coefficients of Glucose and Oxygen in Flocs of
Saccharomyces cerevisiae. 2nd European Symposium on Biochemical Engineering Science (S. Feyo de
Azevedo, Ferreira, E.C.,
K.Ch.A.M. Luyben, P. Osseweijer, Eds.), 289, Porto, 1998. |
|
23. Baptiste,
C., Amaral, A.L., Nicolau, A., Pons, M.-N., Lima, N.,
Ferreira, E.C., Mota, M., Vivier, H.
Automated
Characterization of Protozoa in Activated Sludge. 2nd European Symposium on Biochemical Engineering Science (S. Feyo de
Azevedo,
Ferreira, E.C., K.Ch.A.M. Luyben, P.
Osseweijer, Eds.), 339, Porto, 1998. |
|
22.
Ferreira, E.C. Application of
Image Analysis Techniques in Biotechnology, Wastewater Treatment and
Food Technology. BIOTEC'98 - Book of Abstracts (Mota, M.,
Ferreira, E.C., Eds.), 203, 1998. |
|
21. A.L.
Amaral, M.M. Alves, M. Mota,
Ferreira, E.C. Monitoring
Methanogenic Fluorescence by Image Analysis. BIOTEC'98 - Book of Abstracts (Mota, M.,
Ferreira, E.C., Eds.), 365, 1998. |
|
20. R.
Pinheiro, A.L. Amaral, Ferreira,
E.C., M. Mota. Automatic determination of
yeast cells viability by image analysis. BIOTEC'98 - Book of Abstracts (Mota, M.,
Ferreira, E.C., Eds.), 262, 1998. |
|
19. A.L.
Amaral, A. Nicolau, Ferreira, E.C.,
N. Lima, M. Mota. Motility
assessment of the ciliated
Tetrahymena pyriformis after exposition to toxic compounds using
image analysis. BIOTEC'98 - Book of Abstracts (Mota, M.,
Ferreira, E.C., Eds.), 322, 1998. |
|
18. J.C.
Vieira, Ferreira, E.C., J.A.
Teixeira. Phase contrast microscopy
coupled to image analysis as a rapid method to monitor wine flora. BIOTEC'98 - Book of Abstracts (Mota, M.,
Ferreira, E.C., Eds.), 393, 1998. |
|
17. J. Baeza,
Ferreira, E.C., J. Lafuente.
Real-Time
Expert Control of a Pilot WWTP with Nitrogen and Phosphorous Removal. BIOTEC'98 - Book of Abstracts (Mota, M.,
Ferreira, E.C., Eds.), 321, 1998. |
|
16. D.
Gabriel, Ferreira, E.C., F.
Valero, J. Lafuente. Calibration of
a simplified model describing an urban waste water treatment pilot plant
based on N/D and BEPR criteria. BIOTEC'98 - Book of Abstracts (Mota, M.,
Ferreira, E.C., Eds.), 348, 1998. |
|
15. Rocha, C.,
Ferreira, E.C. Design of
optimal experiments for identification of yield coefficients in a
baker’s yeast model. 1st European Symposium on Biochemical Engineering Science, (Glennon, B.,
Kieran, P.M., Luyben, K.Ch.A.M., Eds.), 99-100, Dublin, 1996. |
|
14. Vicente,
A., Ferreira, E.C., Teixeira,
J.A. Kinetics and stoichiometry of a
batch fermentation using a highly flocculent strain
of
Saccharomyces cerevisiae for Different aeration rates and initial sugar
concentrations. Comunicaciones del III Congresso Ibérico de Biotecnologia - BIOTEC’96, (Fernández-Polanco,
F., Benito, G.G., Encina, P.A.G., Miranda, M.M.P., Eds.), Universidad de
Valladolid, 345-346, 1996. |
|
13.
Ferreira, E.C., Oliveira, F., Pimenta, P., Feyo de Azevedo, S.
Computer-aided teaching of process
engineering. VI - studies on bioprocess identification and control through a
process simulator. CHEMPOR´93 International Chemical Engineering Conference, 713-714, Porto
1993. |
|
12.
Ferreira, E.C., Oliveira, F., Pimenta, P., Feyo de Azevedo, S.
Model-based
identification and control on baker's yeast fed-batch fermentation. 6th European Congress on Biotechnology, Florença, Abstract Books, Vol. II,
TU022, 1993. |
|
11.
Ferreira, E.C., Sousa, V., Feyo de Azevedo, S., Duarte, J.C.
Nonlinear estimation of specific reaction rates and state observers for an ampicillin
enzymatic synthesis. 5th European Congress on Biotechnology, Abstract book, C. Christiansen, L.
Munck, J. Villadsen (Eds.) Munksgaard Int. Publisher, p. 278, Copenhagen
1990. |
|
10.
Ferreira, E.C., Feyo de Azevedo, S., Cardoso Duarte, J.
Modelização
dinâmica adaptativa da síntese enzimática de ampicilina e de uma
fermentação etanólica. Resumos do V Congresso Nacional de Biotecnologia, MC1, Braga, 1990. |
|
9.
Ferreira, E.C., Feyo de Azevedo, S., José Cardoso Duarte.
Os
Microcomputadores na aquisição de dados e controlo em processos
bioquímicos. Encontro Computadores no Ensino da Física e da Química, pp. 104-106,
Coimbra, 1990. |
|
8. Sousa, V.,
Ferreira, E.C., Feyo de Azevedo, S., Duarte, J.C.
Modelling and experimental validation of complex enzymatic reactions. Final Sectoral Meeting on Bioreactors and Biotransformations - Biotechnology
Action Programme (CCE), Troia Portugal, 1989. |
|
7.
Ferreira, E.C., Renard, P., Van Breusegem, V., Dochain, D., Duarte,
J.C., Nyns, E.-J., Bastin, G. Adaptive state
and parameter estimation in ethanolic fermentation. Final Sectoral Meeting on Bioreactors and Biotransformations - Biotechnology
Action Programme (CCE), Troia Portugal, 1989. |
|
6. Duarte,
J.C., Pereira, L.M.,
Ferreira, E.C., J. Menaia. Batch growth
of M. barkeri on pure and co-substrate mixtures. PSTC - Conference on Biotechnology for Health and Agriculture, US Agency
for International Development, Washington, June 1988. |
|
5. Duarte,
J.C., Pereira, L.M., A. Eusébio,
Ferreira, E.C., Menaia, J. Biotechnology
of methanogenic bacteria. Proc. of FEMS Symposium "The Microbiology of Extreme Environments and its
Biotechnological Potential" 18-23 Set. 1988, Tróia, Portugal. |
|
4.
Ferreira, E.C., Pereira, L.M., Duarte, J.C. Estimativa
paramétrica em cinética e modelação de fermentação metanogénica de
Methanosarcina barkeri. Resumos do 4º Congresso Nacional de Biotecnologia, EB-18, Coimbra, 1988. |
|
3. Menaia,
J.A.G.F., Pereira, L.M.,
Ferreira, E.C., Duarte, J.C.
Substrate
utilization by Methanosarcina barkeri in single and co-substrate
cultures. Proceedings of 4th European Congress on Biotechnology 1987, vol.3, p.
548, O.M. Neijssel, R.R. van der Meer, K.Ch.A.M. Luyben (Eds.) Elsevier,
Amsterdam, 1987. |
|
2. Pereira,
L.M.,
Ferreira, E.C., Olatunji, F.O., Duarte,
J.C. Kinetics of
co-substrate growth of Methanosarcina barkeri.
Ciência Biológica, 12(5A), 242 (8º Congresso Nacional de Bioquímica,
Póvoa de Varzim), 1987. |
|
1.
Ferreira, E.C., Duarte, J.C., Feyo de Azevedo, S.
Fermentation data acquisition and control with microcomputers. Ciência Biológica, 12(5A), 234 (8º Congresso Nacional de Bioquímica,
Póvoa de Varzim), 1987. |
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